Output from mutation.sas

	Output from mutation.sas	Source 1 Graph

                     Mutation distances among 20 species                     1

S
P
E
C
I                                           D  D  D  D  D  D  D  D  D  D D
E                D  D  D  D  D  D  D  D  D  1  1  1  1  1  1  1  1  1  1 2
S                1  2  3  4  5  6  7  8  9  0  1  2  3  4  5  6  7  8  9 0  N

Man              0  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  . .  1
Monkey           1  0  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  . .  2
Dog             13 12  0  .  .  .  .  .  .  .  .  .  .  .  .  .  .  .  . .  3
Horse           17 16 10  0  .  .  .  .  .  .  .  .  .  .  .  .  .  .  . .  4
Donkey          16 15  8  1  0  .  .  .  .  .  .  .  .  .  .  .  .  .  . .  5
Pig             13 12  4  5  4  0  .  .  .  .  .  .  .  .  .  .  .  .  . .  6
Rabbit          12 11  6 11 10  6  0  .  .  .  .  .  .  .  .  .  .  .  . .  7
Kangaroo        12 13  7 11 12  7  7  0  .  .  .  .  .  .  .  .  .  .  . .  8
Pekin Duck      17 16 12 16 15 13 10 14  0  .  .  .  .  .  .  .  .  .  . .  9
Pigeon          16 15 12 16 15 13  8 14  3  0  .  .  .  .  .  .  .  .  . . 10
Chicken         18 17 14 16 15 13 11 15  3  4  0  .  .  .  .  .  .  .  . . 11
King Penguin    18 17 14 17 16 14 11 13  3  4  2  0  .  .  .  .  .  .  . . 12
Snapping Turtle 19 18 13 16 15 13 11 14  7  8  8  8  0  .  .  .  .  .  . . 13
Rattlesnake     20 21 30 32 31 30 25 30 24 24 28 28 30  0  .  .  .  .  . . 14
Tuna            31 32 29 27 26 25 26 27 27 27 26 27 27 38  0  .  .  .  . . 15
Screwworm Fly   33 32 24 24 25 26 23 26 26 26 26 28 30 40 34  0  .  .  . . 16
Moth            36 35 28 33 32 31 29 31 30 30 31 30 33 41 41 16  0  .  . . 17
Bakers Mould    63 62 64 64 64 64 62 66 59 59 61 62 65 61 72 58 59  0  . . 18
Bread Yeast     56 57 61 60 59 59 59 58 62 62 62 61 64 61 66 63 60 57  0 . 19
Skin Fungus     66 65 66 68 67 67 67 68 66 66 66 65 67 69 69 65 61 61 41 0 20

                     Mutation distances among 20 species                     2

                 Multidimensional Scaling:  Data=WORK.MUTATE
                Shape=TRIANGLE Condition=MATRIX Level=ORDINAL
                  Coef=IDENTITY Dimension=2 Formula=1 Fit=1

        Mconverge=0.01 Gconverge=0.01 Maxiter=100 Over=2 Ridge=0.0001

                                                      Convergence Measures
                     Badness-of-Fit     Change in  --------------------------
Iteration  Type           Criterion     Criterion      Monotone      Gradient
-----------------------------------------------------------------------------

      0    Initial         0.303505             .             .             .
      1    Monotone        0.100031      0.203473      0.284451      0.696337
      2    Gau-New         0.069450      0.030581             .             .
      3    Monotone        0.064778      0.004672      0.025093      0.408119
      4    Gau-New         0.060313      0.004466             .             .
      5    Monotone        0.052015      0.008298      0.030135      0.364790
      6    Gau-New         0.049328      0.002686             .             .
      7    Monotone        0.043039      0.006289      0.023631      0.330942
      8    Gau-New         0.041908      0.001131             .             .
      9    Monotone        0.037002      0.004905      0.019546      0.316697
     10    Gau-New         0.036307      0.000695             .             .
     11    Monotone        0.032108      0.004199      0.016923      0.289551
     12    Gau-New         0.031964      0.000144             .             .
     13    Monotone        0.028185      0.003779      0.015053      0.283345
     14    Gau-New         0.028088   0.000097212             .             .
     15    Monotone        0.024881      0.003207      0.013029      0.282052
     16    Gau-New         0.024836   0.000045750             .             .
     17    Monotone        0.022027      0.002809      0.011457      0.285128
     18    Gau-New         0.021978   0.000049351             .             .
     19    Monotone        0.019586      0.002391      0.009968      0.289630
     20    Gau-New         0.018751      0.000835             .      0.020932
     21    Gau-New         0.018746   0.000005122             .      0.008113

                     Convergence criteria are satisfied.

                     Mutation distances among 20 species                     3
                             Output configuration

  SPECIES          _DIMENS_  _MATRIX_  _TYPE_     _NAME_    DIM1      DIM2

                       2         .     CRITERION           0.01875    .
  Man                  2         .     CONFIG      D1      0.45411   0.11562
  Monkey               2         .     CONFIG      D2      0.45448   0.10069
  Dog                  2         .     CONFIG      D3      0.50719   0.09313
  Horse                2         .     CONFIG      D4      0.51844   0.13253
  Donkey               2         .     CONFIG      D5      0.51991   0.12441
  Pig                  2         .     CONFIG      D6      0.50736   0.10441
  Rabbit               2         .     CONFIG      D7      0.48957   0.08467
  Kangaroo             2         .     CONFIG      D8      0.50595   0.11360
  Pekin Duck           2         .     CONFIG      D9      0.50293   0.04915
  Pigeon               2         .     CONFIG      D10     0.49585   0.04943
  Chicken              2         .     CONFIG      D11     0.51202   0.05017
  King Penguin         2         .     CONFIG      D12     0.50757   0.05012
  Snapping Turtle      2         .     CONFIG      D13     0.55401   0.08257
  Rattlesnake          2         .     CONFIG      D14     0.52377  -0.17930
  Tuna                 2         .     CONFIG      D15     0.74188   0.03856
  Screwworm Fly        2         .     CONFIG      D16     0.57274  -0.15397
  Moth                 2         .     CONFIG      D17     0.38674  -0.14326
  Bakers Mould         2         .     CONFIG      D18    -2.24155  -2.65836
  Bread Yeast          2         .     CONFIG      D19    -3.15496   1.02107
  Skin Fungus          2         .     CONFIG      D20    -3.35801   0.92477

                     Mutation distances among 20 species                     4
                             Output configuration

             Plot of DIM2*DIM1$SPECIES.  Symbol points to label.

       |
       |
   1.0 +             > Bread Yeast
       |          > Skin Fungus
       |
       |
       |
   0.5 +
       |
       |
       |                                                    SnapKaPiDonkeye
       |                                                King Monkeyn38MChicken
   0.0 +                                                     PigRabb<vor>eTuna
       |                                                      MotPe<in Duck
       |                                                 Rattlesnake 2
       |                                                       Screwworm Fly
D      |
i -0.5 +
m      |
e      |
n      |
s      |
i -1.0 +
o      |
n      |
       |
2      |
  -1.5 +
       |
       |
       |
       |
  -2.0 +
       |
       |
       |
       |
  -2.5 +
       |
       |                         > Bakers Mould
       |
       |
  -3.0 +
       |
       ---+------------+------------+------------+------------+------------+--
         -4           -3           -2           -1            0            1

                                     Dimension 1

NOTE: 1 obs had missing values.  33 label characters hidden.

                     Mutation distances among 20 species                     5
                         Complete linkage clustering

                      Complete Linkage Cluster Analysis

         Mean Distance Between Observations               = 31.37895

 Number                                          Frequency   Normalized
   of                                               of New     Maximum
Clusters   ----------Clusters Joined----------     Cluster    Distance    Tie

     19    Man                Monkey                     2    0.031869     T
     18    Horse              Donkey                     2    0.031869
     17    Chicken            King Penguin               2    0.063737
     16    Pekin Duck         Pigeon                     2    0.095606     T
     15    Dog                Pig                        2    0.127474     T
     14    CL16               CL17                       4    0.127474
     13    CL15               Rabbit                     3    0.191211
     12    CL13               Kangaroo                   4    0.223080
     11    CL14               Snapping Turtle            5    0.254948
     10    CL12               CL18                       6    0.382422
      9    Screwworm Fly      Moth                       2    0.509896
      8    CL19               CL10                       8    0.541765     T
      7    CL8                CL11                      13    0.605502
      6    CL7                Rattlesnake               14    1.019792     T
      5    CL6                Tuna                      15    1.211003
      4    CL5                CL9                       17    1.306609     T
      3    Bread Yeast        Skin Fungus                2    1.306609
      2    Bakers Mould       CL3                        3    1.943979
      1    CL4                CL2                       20    2.294532

                     Mutation distances among 20 species                     6
                         Complete linkage clustering

                      Complete Linkage Cluster Analysis

                            Name of Observation or Cluster

                                                  S
                                                  n
                                                  a        S
                                               K  p        c     B
                                               i  p  R     r     a  B  S
                                      P        n  i  a     e     k  r  k
                                      e        g  n  t     w     e  e  i
                             K        k           g  t     w     r  a  n
                             a        i     C  P     l     o     s  d
                 M        R  n     D  n  P  h  e  T  e     r           F
                 o        a  g  H  o     i  i  n  u  s     m     M  Y  u
                 n        b  a  o  n  D  g  c  g  r  n  T     M  o  e  n
              M  k  D  P  b  r  r  k  u  e  k  u  t  a  u  F  o  u  a  g
              a  e  o  i  i  o  s  e  c  o  e  i  l  k  n  l  t  l  s  u
              n  y  g  g  t  o  e  y  k  n  n  n  e  e  a  y  h  d  t  s
      M  2.5 +
      a      |
      x      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
      i      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXX
      m      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXX
      u      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXX
      m    2 +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXX
             |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXX
      D      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX
      i      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX
      s      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX
      t      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX
      a  1.5 +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX
      n      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX
      c      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX
      e      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXX  .  .  .
             |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX  .  .  .
      B      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX  .  .  .
      e    1 +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  XXXX  .  .  .
      t      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  .  XXXX  .  .  .
      w      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  .  XXXX  .  .  .
      e      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  .  XXXX  .  .  .
      e      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  .  XXXX  .  .  .
      n      |XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  .  .  XXXX  .  .  .
         0.5 +XXXX  XXXXXXXXXXXXXXXX  XXXXXXXXXXXXX  .  .  XXXX  .  .  .
      C      |XXXX  XXXXXXXXXXXXXXXX  XXXXXXXXXXXXX  .  .  .  .  .  .  .
      l      |XXXX  XXXXXXXXXX  XXXX  XXXXXXXXXXXXX  .  .  .  .  .  .  .
      u      |XXXX  XXXXXXXXXX  XXXX  XXXXXXXXXXXXX  .  .  .  .  .  .  .
      s      |XXXX  XXXXXXX  .  XXXX  XXXXXXXXXX  .  .  .  .  .  .  .  .
      t      |XXXX  .  .  .  .  XXXX  XXXX  XXXX  .  .  .  .  .  .  .  .
      e    0 +XXXX  .  .  .  .  XXXX  .  .  .  .  .  .  .  .  .  .  .  .
      r
      s

Graphic output from mutation.sas

GTREE of &data
[GTREE 09/28/99 ]

Output from mutation.sas

Mutation distances among 20 species 1

Mutation distances among 20 species 2

Mutation distances among 20 species 3 Output configuration

Mutation distances among 20 species 4 Output configuration

Mutation distances among 20 species 5 Complete linkage clustering

Mutation distances among 20 species 6 Complete linkage clustering

9

Graphic output from mutation.sas